I’ve been teaching undergraduate and graduate bioinformatics for three years at Northern Arizona University. This semester I tried an experiment in my undergraduate course: I decided to ditch slides and instead use IPython Notebooks to present my course materials. This turned out to be hugely successful, and resulted in an early version of an online …
The QIIME developers are hosting a full-day workshop about QIIME on August 30th, 2014 immediately following ISME 15. Here’s a link to the registration information. Having taken one of these classes myself, I can highly recommend them.
Starting in the fall of 2012 we began a second project to involve undergraduates (and a high school student) in real research that relates to the microbiology of the built environment. This time we looked at biogeography and succession in microbial communities found in aquariums. A description of the project can be found here and …
For a summary and list of talks from the QIMME/VAMPS Workshop, see here. Below are the various presentation videos that I recorded at the meeting. Mitch Sogin talks about the capabilities of VAMPS: Rob Knight talks about the capabilities of QIIME: Sue Huse discusses best practices in marker gene analysis (must-see for new …
For those wanting to catch up on the workshop discussions that happened last week in Boulder, we’ve pulled together all the tweets into a Storify! Includes coverage of the QIIME/VAMPS bioinformatics workshop, and the subsequent fungal meeting focused on resources for ITS gene barcoding. [View the story “QIIME/VAMPS and ITS fungi #microbenet meetings” on Storify]
(Note: This post will be regularly updated with links to speaker slides and videos of some presentations as that information becomes available) The two-day microBEnet sponsored QIIME/VAMPS workshop just wrapped up yesterday. The goal of this conference was to bring the developers of QIIME and VAMPS together with users from the microbiology of the built …