Microbiome Bioinformatics Postdoctoral Scientist, Colorado State University

The Metcalf lab at Colorado State University is seeking a microbiome bioinformatics postdoctoral scientist. The scientist will analyze multi-omics data sets, including but not limited to: amplicon sequencing data, shotgun metagenomics data, and metabolomics data. Min. reqs. include: Ph.D. in bioinformatics, ecology, microbiology or similar field. Proficient in coding languages (Python preferred). Demonstrated knowledge of …

BE microbiome as biosensors

  Hi MoBE blog, I just wanted to share a piece that I recently wrote for a Special Issue on the journal Microbial Biotechnology. The Special issue presents a collection articles about “The contribution of microbial biotechnology to sustainable development goals”, and the title of my article is “Microbial communities as biosensors for monitoring urban …

Reasonably cautious but optimistic editorial on “The human microbiome: an emerging tool in forensics” 

I have personally been interested in microbial forensics of various kinds for quite a while (I worked at TIGR for many years and was peripherally involved in some of the anthrax DNA sequencing and analysis there).  I have even served on various working groups from the US Government discussing the potential for microbes to be …

New papers on Microbiology of the Built Environment, January 29, 2017

Microbes indoors Building-related symptoms are linked to the in vitro toxicity of indoor dust and airborne microbial propagules in schools: A cross-sectional study – JT Salin – Environmental Research ($41.95) We examined whether the in vitro toxicity of indoor samples from school buildings was associated with work-related health symptoms (building-related symptoms, BRS). Administrators of the Helsinki …

New papers on Microbiology of the Built Environment, October 21, 2016

Microbes indoors How do we make indoor environments and healthcare settings healthier? – Jack A. Gilbert – Microbial Biotechnology (OA) It is now well accepted that our modern lifestyle has certain implications for our health (Schaub et al., 2006), mainly as a result of our willingness to remove ourselves from the biological diversity of our …

New papers on microbiology of the built environment, March 12, 2016

Forensic microbiology A cloud of distinction – Julian Smith  –  New Scientist ($1.99) Could the trails of microbes we leave behind be used to solve crimes? Julian Smith picks up the scent. (…) Like our hapless suspect, we all leave traces of our microbes behind. We are haloed by an invisible nebula of bacteria, fungi and viruses. …

Interesting paper on estimating microbial environmental data concentrations in a field setting

Got notified of this paper by some automated Google Scholar searchers I have set up (this one for papers on microbial forensics) and I thought it would be of interest to some.: Source: Journal of Exposure Science and Environmental Epidemiology – Considerations for estimating microbial environmental data concentrations collected from a field setting By Erin E …