A microbial sequencing discussion course built around a paper and a blog post

So – just a quick post for now.  More details to come.  But I wanted to get a little bit about this out there. For a few years I have been teaching a mid-level course at UC Davis on “DNA sequencing based studies of microbial diversity’.  The course has evolved over the years from a …

An informative glimpse into the drug factory microbiome: Which bugs coexist with our drugs? The story behind the paper

The story behind: Toward the Drug Factory Microbiome: Microbial Community Variations in Antibiotic-Producing Clean Rooms (OMICS. 2018 Feb;22(2):133-144. doi: 10.1089/omi.2017.0091.) PMID: 28873001 [Preprint] It was in 2013, on my return to Cairo University after a couple of years as a visiting scientist at UCSD, that I met Amal for the first time. Amal was a fresh master’s …

Postdoc Opportunity for Computational Microbial Ecologist in Seattle

  The Gibbons group at the Institute for Systems Biology (ISB) is seeking a computationally-oriented Postdoctoral Fellow with interests in microbial ecology, evolution, and human health. The successful applicant will work with an interdisciplinary team of microbiologists, systems biologists, bioinformaticians, and clinical researchers to:  Integrate and analyze multi-omic data from Arivale as part of the …

Want to become a “Guardian of Microbial Diversity” support microbe collections

Collections of microbial cultures are critical tools in studying the microbial world around us. I have learned this from personal experience.  The DSMZ for example, was absolutely essential to the entire GEBA (Genomic Encyclopedia of Bacteria and Archaea) project I coordinated via the DOE-JGI.  I recommend that everyone out there find ways to support various …

Training course in “Preserving, storing and maintaining microorganisms”

Of potential interest: Sept. 12-14 2017. Training course in Preserving, storing and maintaining microorganisms. From the site: Presented by staff from CABI, this course will be of interest to everyone involved in the handling, distributing and storing microorganisms. The course covers all aspects of culture preservation, maintenance and culture collection management and complies with the …