Special issue of mSystems: Essays by Early-Career Systems Microbiology Scientists

This should be of interest to many: mSystems has a whole issue dedicated to essays by “Early-Career Systems Microbiology Scientists”. Early-Career Systems Microbiology Scientists Jack A. Gilbert mSystems March/April 2018 3:e00002-18; doi:10.1128/mSystems.00002-18 http://msystems.asm.org/content/3/2/e00002-18   Conflict of Interest Declarations by Contributing Editors of the Special Issue on Early-Career Systems Microbiology Scientists, Sponsored by Janssen Human Microbiome …

New Report on The Struggle for Water Justice from the UC Davis Center for Regional Change

Of potential interest:: The Struggle for Water Justice from the Center for Regional Change at UC Davis. Summary: The Struggle for Water Justice: Disadvantaged Unincorporated Communities in California’s San Joaquin ValleyFebruary 2018 In California, lack of access to clean, safe, and affordable water is a threat to public health and well-being, and violates the state’s newly codified …

Paper of interest: antibiotic resistance and the safety of reusing treated wastewater

Paper of possible interest: Hong, P.-Y.; Julian, T.R.; Pype, M.-L.; Jiang, S.C.; Nelson, K.L.; Graham, D.; Pruden, A.; Manaia, C.M. Reusing Treated Wastewater: Consideration of the Safety Aspects Associated with Antibiotic-Resistant Bacteria and Antibiotic Resistance Genes. Water 2018, 10, 244. Abstract: As more countries engage in water reuse, either intended or de facto, there is …

New paper of potential interest on economic development and the human microbiome

There is a new paper out of possible interest. Source: Stagaman K, Cepon-Robins TJ, Liebert MA, Gildner TE, Urlacher SS, Madimenos FC, Guillemin K, Snodgrass JJ, Sugiyama LS, Bohannan BJM. 2018. Market integration predicts human gut microbiome attributes across a gradient of economic development. mSystems 3:e00122-17. https://doi.org/10.1128/mSystems.00122-17.     Abstract: Economic development is marked by dramatic …

So you want to run FACS on your microbiome samples…

So you want to run FACS on your microbiome samples… By Cara Pardon Although optimized for eukaryotic cell research, an increasingly common technique used in the microbiome field is Fluorescence Activated Cell Sorting (FACS).  From sorting cells for single cell genomics to identifying the host range of a plasmid; from detecting metabolically active cells in …

New Report: Environmental Chemicals, the Human Microbiome, and Health Risk: a Research Strategy

​This seems likely to be of interest to many​ – got this via email. New Report: Environmental Chemicals, the Human Microbiome, and Health Risk: a Research Strategy The human microbiome is composed of a great number of diverse microorganisms that inhabit the human body. Until recently, the role of the microbiome in maintaining human health …

Incorporating quantity into microbiome analysis

In addition to thinking about appropriate statistical analyses given the compositional nature of microbiome data sets (see the previous post here), there is a related but different issue that’s back on my mind – the benefit that quantitative information would bring to research questions. My engineering colleagues in the built environment world have consistently reminded …

Microbial biodiversity assessment of the European Space Agency’s ExoMars 2016 mission

Determining if life exists or ever existed beyond Earth is one of the most interesting scientific questions. Reports on numerous habitable planets have increased the speculations about potential extra-terrestrial life. However, these theoretically life-supporting planets are far beyond human’s reach – except Mars. In order to explore if there ever was life on Mars, the …

Paper of interest: Fungal Communities in Near Surface Air Are Similar across Northwestern Europe

This may be of interest: Fungal Communities Including Plant Pathogens in Near Surface Air Are Similar across Northwestern Europe Nicolaisen M, West JS, Sapkota R, Canning GGM, Schoen C and Justesen AF (2017) Fungal Communities Including Plant Pathogens in Near Surface Air Are Similar across Northwestern Europe. Front. Microbiol. 8:1729. doi: 10.3389/fmicb.2017.01729 Information on the …

Indoor microbiology paper of interest on effects of moisture & interventions

For those interested in microbiology of the built environment this paper seems definitely worth checking out: Indoor microbiota in severely moisture damaged homes and the impact of interventions. Jayaprakash B, Adams RI, Kirjavainen P, Karvonen A, Vepsäläinen A, Valkonen M, Järvi K, Sulyok M, Pekkanen J, Hyvärinen A, Täubel M. Microbiome. 2017 Oct 13; 5(1):138 Abstract …