Backyard lab sequencing party: MinION “fieldwork”

So we recently had two problems with a common solution: #1, we hadn’t had a lab social function in awhile #2, we wanted to try using the MinION sequencer in a “field” setting, but weren’t quite ready to try it without electricity on hand. The obvious solution, have the entire lab over to my house …

Microbiome Bioinformatics Postdoctoral Scientist, Colorado State University

The Metcalf lab at Colorado State University is seeking a microbiome bioinformatics postdoctoral scientist. The scientist will analyze multi-omics data sets, including but not limited to: amplicon sequencing data, shotgun metagenomics data, and metabolomics data. Min. reqs. include: Ph.D. in bioinformatics, ecology, microbiology or similar field. Proficient in coding languages (Python preferred). Demonstrated knowledge of …

Journal Club: Ecology of sleeping: the microbial and arthropod associates of chimpanzee beds

Interesting new article from Rob Dunn’s lab about the microbial and arthopod communities associated with chimpanzee beds.  The article itself is clearly pitched within a microbiology of the built environment context… highlighting the fact that we haven’t really looked much a non-human constructed artificial environments.  Pretty cool stuff! The outpouring of press on the topic …

4th Annual MetaSUB Conference (Aug. 14-15) and Call for Abstracts

We are excited to announce the MetaSUB International Consortium’s 4th Annual Conference on urban metagenomics to be held at the Tivoli Ecoresort Praia do Forte Bahia in Brazil, from August 14-15, 2018. The conference is co-hosted by Weill Cornell Medicine and the AC Camargo Cancer Center. You can register for the meeting here: http://metasub.org/metasub-2018-conference-registration-form/ If you’d …

Arab-American Frontiers of Science, Engineering, and Medicine Symposium: November 2018

Received this in the mail from Katie Bowman at NAS.  Looks like a program with a lot of MoBE related material considering the sessions are “Big Data”, “Water Systems”, “The Microbiome”, “Air Quality”, and “Next Generation Buildings and Infrastructure”.  Details below are from the e-mail.   Dear Colleagues,   The U.S. National Academies of Sciences, …

A microbial sequencing discussion course built around a paper and a blog post

So – just a quick post for now.  More details to come.  But I wanted to get a little bit about this out there. For a few years I have been teaching a mid-level course at UC Davis on “DNA sequencing based studies of microbial diversity’.  The course has evolved over the years from a …