Genomic standards for microbial ecology studies (including built environment)

There is a new #openaccess article in ISME of great importance to those studying the microbiology of the built environment: The ISME Journal – The genomic standards consortium: bringing standards to life for microbial ecology.  This article focuses mostly on those characterizing “marker genes” (i.e., genes of value in phylogenetic characterization of taxa) in some way. …

Want to learn what eco-evo types are doing w/ #metagenomic & #barcoding data? Go to iEVOBIO 6/21-22

Last year, iEVOBIO was a fun, interesting meeting for many reasons (not the least of which is that I was the keynote speaker).  If you want to learn more about last years meeting check out my blog post: Summary of #iEVOBIO Day 1 #evolution #phylogenetics #informatics #opensource But I note, that meeting was so, well, last …

NIST press release on standards for spore recovery from indoor surfaces; note paper not #OpenAccess #microBEnet

A recent press release from NIST (the National Institute of Standards and Technology) is of some interest:NIST Seeks Improved Recovery of Samples from Biohazard Events.  In the press release they discuss a new paper in (AEM) Applied and Environmental Microbiology from NIST: Parameters Affecting Spore Recovery from Wipes Used in Biological Surface Sampling. Alas, the paper …

#microBEnet journal club: review on microbes in dust & implications for health from 2007

Just discovered this paper by Dale Griffin from the USGS:Atmospheric Movement of Microorganisms in Clouds of Desert Dust and Implications for Human Health. Though it does not focus on the built environment it definitely is connected and worth a read.  It is freely available in PubMed Central.  Microbes that are found on dust and other particles …

A little known issue in indoor microbiology: degradation of paper & risks to paper heritage #microBEnet

Though much of the work on microbiology of the built environment focuses on health in some way, there are other reasons to be interested in “Who are the microbes in your neighborhood.”  One of them is discussed in this paper:  Trends in Microbiology : Scripta manent? Assessing microbial risk to paper heritage. Microbes in the …

Nice title: A glimpse under the rim — the composition of microbial biofilm communities in domestic toilets

OK, so the article is a few years old (and not open access) but it should win a prize for best/worst title in a recent paper on indoor microbiology:  A glimpse under the rim — the composition of microbial biofilm communities in domestic toilets – Egert – 2009 – Journal of Applied Microbiology I note …