Strain-resolved analysis of hospital rooms & infants reveals overlap between human & room microbiome 

Of potential interest – new paper from the Banfield Lab – thanks to Elisabeth Bik for pointing me to this on Twitter.   Preterm infants exhibit different microbiome colonization patterns relative to full-term infants, and it is speculated that the hospital room environment may contribute to infant microbiome development. Here, we present a genome-resolved metagenomic …

Of potential interest: factors influencing antimicrobial use in global aquaculture #

This may be of interest to folks. Multiple stakeholders have, as a result, criticized the aquaculture industry, resulting in consequent regulations in some countries. AM use in aquaculture differs from that in livestock farming due to aquaculture’s greater diversity of species and farming systems, alternative means of AM application, and less consolidated farming practices in …

Paper generating a lot of buzz: Nucleic acid purification from plants, animals and microbes in under 30 seconds

Well, this paper is generating a lot of buzz on social media.  Nucleic acid purification from plants, animals and microbes in under 30 seconds.  For example see Eric Topol’s Tweet about it Now this is innovative: paper dipstick extraction of DNA or RNA in < 30 seconds https://t.co/RKuLsAW7fM @PLOSBiology @UQ_News pic.twitter.com/FH1krTFYMw — Eric Topol (@EricTopol) …

New paper of interest: Unpacking factors influencing antimicrobial use in global aquaculture

This paper may be of interest: Unpacking factors influencing antimicrobial use in global aquaculture.    Henriksson, P.J.G., Rico, A., Troell, M. et al. Sustain Sci (2017). https://doi.org/10.1007/s11625-017-0511-8 Abstract: Global seafood provides almost 20% of all animal protein in diets, and aquaculture is, despite weakening trends, the fastest growing food sector worldwide. Recent increases in production have …

Nice title, nice paper: Microbiome Datasets Are Compositional: And This Is Not Optional 

This seems like it is a must read for anyone working on microbiomes: Frontiers | Microbiome Datasets Are Compositional: And This Is Not Optional | Microbiology Gloor GB, Macklaim JM, Pawlowsky-Glahn V and Egozcue JJ (2017) Microbiome Datasets Are Compositional: And This Is Not Optional. Front. Microbiol. 8:2224. doi: 10.3389/fmicb.2017.02224 Summary from the paper: Datasets …

Antibiotics Use In Livestock: A Taste of Our Own Medicine 

There is a nice article by Katherine Wu on the history of antibiotic usage in livestock that is worth a look:  A Taste of Our Own Medicine – I Contain Multitudes – Medium This is part of the HHMI/Tangled Bank Studio’s series on “I Contain Multitudes” based on Ed Yong’s book of the same name. It …