Tag: tools

Microbial community, microbiome, and metagenomic analysis tools of the week

By Jonathan Eisen   Posted in Scholarly Literature (Journals, Books, Reports)
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Compiling some of the more interesting tools I have seen recently. Some I have plyed with but most I have just looked at the papers briefly. Microbiome | Abstract | VizBin – an application for reference-independent visualization and human-augmented binning of metagenomic data. Global biogeographic sampling of bacterial secondary metabolism GrammR: Graphical Representation and Modeling …

New microbiome tools just keep coming – fun times – hard to keep up

By Jonathan Eisen   Posted in Scholarly Literature (Journals, Books, Reports)
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So many new tools and methods in microbiome and microbial community studies and it is just really hard to keep up with them.  Here are some that have caught my eye recently: PLOS ONE: IM-TORNADO: A Tool for Comparison of 16S Reads from Paired-End Libraries. Jeraldo P, Kalari K, Chen X, Bhavsar J, Mangalam A, …