Lake Arrowhead Microbial Genomics Meeting (#LAMG2018) Day 3

Day 3 of the meeting was virus day!  Viruses have often gotten short shrift at these kinds of meeting, especially once 16S rRNA sequencing took over the microbial world.  But the balance is shifting back, largely because of metagenomics. First up was Andrew J. Hryckowian from Stanford University “Bacteriodes thetaiotaomicron as a Chassis for Understanding …

Lake Arrowhead Microbial Genomics Meeting (#LAMG2018) Day 2

Day 2 of Lake Arrowhead kicked off with a nice mix of talks with seemingly a focus on biogeography and spatial resolution of microbial communities which was pretty interesting to see. First was Martin Ackermann from ETH Zurich, Switzerland “A Microscale Perspective on Microbial Interactions”.  Introduced topic by talking about the need to understand what’s …

Post-Doc/Microbial Genomics in Lebanon

(This post was written by, and posted on behalf of, Sima Tokajian at LAU) The Department of Natural Sciences in the School of Arts and Sciences at the Lebanese American University invites applicants for a post-doctoral fellowship position in the field of Microbial Genomics within a Microbial Pathogenomics team. The department is seeking a highly …

Report and Storify from Lake Arrowhead: Day 2

Another great day at the Lake Arrowhead Microbial Genomics meeting.   The session titles today were “Metagenomics/Pathogens/Antibiotics/Evolution” and “Antibiotic Resistance”.  As always, the best summary of the talks can be found in the Storify below.   My random notes are here… these are just the things that struck me. Thanks to Surya Saha for the …

Swabs to Genome Workflow available as pre-print on PeerJ

Almost exactly a year ago we finally wrapped up our undergraduate project focusing on sequencing and assembling reference genomes from the built environment.  This project aimed to take undergrads through every step from starting with a swab to ending with a published genome announcement and data in NCBI. Over the course of the work, we …