An anvi’o workshop at the Joint Genome Institute

Just a quick post here about an upcoming anvi’o workshop at the Joint Genome Institute (JGI).  While I’ve never used anvi’o myself, I know that people rave about it and the visualizations it produces look really cool.  It can be used with metagenomic, genomic, and transcriptomic data.  Information below copied from the workshop website.   …

Worth a look: Special issue of @NYASAnnals on “Antimicrobial Therapeutics Reviews” 

  There is a whole issue of the Annals of the NY Academy of Sciences that may be of interest.  The focus of the issue is on Antimicrobial Therapeutics Reviews. Some of the papers are freely available.  These are Resistance diagnosis and the changing epidemiology of antibiotic resistance(pages 5–17) by David McAdams Resistance diagnosis and the changing …

Wanted – recommended service providers for microbial sequencing (genomes, rRNA, metagenomes, etc)

In January 2014 I wrote this post about “microbiome” sequencing services. I have gotten many outside requests for the following information — what places (companies, Universities, government agencies, etc) provide contract services for rRNA PCR and sequencing? Source: Request — Information on Places that do rRNA sequencing as a service — microBEnet: the microbiology of the …

21st Annual International Meeting on Microbial Genomes at Lake Arrowhead 9/18-22

The meeting page for the 21st Annual International Meeting on Microbial Genomes at Lake Arrowhead is now up.  This has been one of my favorite meetings for many many years (full disclosure – I am now a co-organizer and have been for the last few meetings).  Note – the meeting is NOT just about genomes – it …

New paper on diseased vs healthy infants in a NICU, possible impacts for future hospital microbiome work

This week in eLife, our lab published a study entitled Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis (NEC) development. Spearheaded by a talented Banfield Lab post-doc, Tali Raveh-Sadka, in collaboration with Michael Morowitz’s Lab, the study aimed to find the causative agent in an outbreak of NEC cases that …

We are not alone at ASM 2014

A group of us from Jonathan Eisen’s lab attended the General Meeting for the American Society for Microbiology (ASM) last month in Boston. A major highlight of the conference was “We Are Not Alone: Microbial Revelations of the Built Environment,” a symposium that was organized by the Junior Advisory Group that is made up of postdocs and …