Microbiome Bioinformatics with QIIME 2 workshop, June 21-23 2017 in Las Vegas, NV

Members of the QIIME development group, led by Greg Caporaso, will teach a three-day workshop on bioinformatics tools for microbial ecology. The workshop will include lectures covering basic QIIME 2 usage and theory, and hands-on work with QIIME 2 to perform microbiome analysis from raw sequence data through publication-quality statistics and visualizations. This workshop will …

3/12 Deadline to Apply: Quantitative Approaches to Biomedical Data Science on the Microbiome

This looks interesting: Source: Innovation Lab 2017 – BD2K Training Coordinating Center From the site The BD2K Training Coordinating Center is organizing an Innovation Lab to foster new interdisciplinary collaborations among quantitative and biomedical researchers to address data science challenges in our understanding of the microbiome. The scope of microbiome, as defined here, broadly describes the …

Training the trainers: training for teaching computational workshops

This is a great idea —  Instructor training for teaching computational workshops. From my UC Davis colleague Titus Brown. I have copied details below. As part of our Summer Institute in Data Intensive Biology, we will be running a week-long instructor training from June 18 to June 25 at the University of California, Davis. The instructor training will …

NASA postdoctoral fellowship solicitation to study the microbiology of the #ISS

In parallel to the Alfred P. Sloan Foundation offer of two postdoctoral fellowships to study the microbiology of the ISS, NASA is also issuing a pair of postdoc fellowships on their end.  The collaboration between Sloan and NASA is great to see, since there is significant overlap between their interests in this field.  I’m really …

STAMPS course at MBL

A few weeks ago I attended a course entitled “Strategies and Techniques for Analyzing Microbial Population Structure” at the Marine Biological Laboratory in Woods Hole, along with a number of other students, postdocs and faculty engaged in the study of the microbiology of the built environment (as well as the oceans, humans, animals, plants). This excellent …

QIIME 2 workshop Nov 4-5 (just prior to SSSA meeting) in Phoenix, AZ

Members of the QIIME development group, led by Greg Caporaso and Antonio Gonzalez, will teach a two-day workshop on bioinformatics tools for microbial ecology. The workshop will include lectures covering basic QIIME usage and theory, and hands-on work with QIIME to perform microbiome analysis from raw sequence data through publication-quality statistics and visualizations. The workshop …

MoBE Early Career Workshop

Last week, Melissa Dsouza and Jack Gilbert at the University of Chicago hosted a Sloan sponsored MoBE Early Career Workshop. I had the pleasure of attending this well organized event and was inspired by this highly intelligent and motivated group of scientists. The future for the MoBE is bright indeed if these scientists are able to find jobs …

December Mothur Workshop, part 2

Here are my notes from day 2 of the Mothur workshop taught by Pat Schloss (pdschloss at gmail.com) in December 2015. For those who are interested in learning to use Mothur for microbiome studies, Pat will be teaching another one in February. Mothur is better for bacterial characterization than eukaryotes because the sequences are aligned before OTU clustering. This …

December Mothur Workshop, part 1

Pat Schloss (pdschloss at gmail.com) offers excellent workshops on the Mothur software for analyzing 16S rRNA data for bacteria. He’s just announced the next one (February 8 to 10, 2016 near the Detroit airport). I had the pleasure of attending the December workshop. A diverse and international group attended the workshop, with many folks who are interested in the human microbiome. …