Kristen DeAngelis slides for “Microbial Diversity” Course

My course slides are updated for 2017 with a new lecture on acellular life. Lecture 01 (3-21-2017) slides from Kristen DeAngelis Lec02 phylogeny (3-23-2017) from Kristen DeAngelis Lecture 03 (3-28-2017) slides from Kristen DeAngelis Lecture 20 (4-20-2017) slides from Kristen DeAngelis Lecture 22 (4-27-2017) slides from Kristen DeAngelis   Lecture 23 (5-2-2017) acellular life slides …

Training the trainers: training for teaching computational workshops

This is a great idea —  Instructor training for teaching computational workshops. From my UC Davis colleague Titus Brown. I have copied details below. As part of our Summer Institute in Data Intensive Biology, we will be running a week-long instructor training from June 18 to June 25 at the University of California, Davis. The instructor training will …

Of possible interest: Biosafety Design Initiative courses and more

Got pointed to this Biosafety Design Initiative on Twitter @phylogenomics This may be of interest – “eval of clean & controlled environmnts & design of space & infrastructr” https://t.co/5P8iDsVt2o — Laurie Garrett (@Laurie_Garrett) January 23, 2017 It may be of interest to some. They have courses and other activities connected to microbes in the built environment. …

Koala Poop Microbiome Class: Summary and Class Materials

As introduced a few months ago, our lab (with indispensable help again from Ashley Vater) taught a new research-based freshman seminar course.  The impetus for this course was one that we ran last year, testing if Swabs to Genomes was possible in a 10-week quarter.  Given the complexity and expense of the genome sequencing, we …

A serendipitous demonstration of the power of social media in the classroom

“Social media is a waste of time”, “You should be writing grants”, “Spend more time at the bench and less time on Twitter” I don’t really want to wade into this discussion too strongly… there are a number of great resources out there documenting the utility of social media in science and science communication (examples …

Koala Poop Microbiome Class: Week 10, Antibiotic Resistance Measurements

Since this was the last week of the quarter, we didn’t require the students to blog as in the previous 9 weeks.  Also, mostly we recapped what had happened in the class and discussed various assignments.  But the students did measure the antibiotic resistance of their strains, and we also had a powerful demonstration of …

Koala Poop Microbiome Class: Week 9, Antibiotic Resistance

(This blog post was prepared by students enrolled in the Koala Poop Microbiome Class in the Fall of 2016 at UC Davis) This week we focused on antibiotic sensitivity on the individual bacteria that were identified last week. The day before class, the bacteria that we have been working with all quarter were recultured in …

Koala Poop Microbiome Class: Week 7, Process Sanger Sequences and BLAST

(This blog post was prepared by students enrolled in the Koala Poop Microbiome Class in the Fall of 2016 at UC Davis) This week in lab we finally identified our microbes! The past six weeks have been a culmination of lab work, both successful yet sometimes frustrating, to bring us to this point of finally …