Journal of Bacteriology minireview collection on host-microbe interactions

Just got this announcement via email and thought it might be of interest. New eBook Special Collection of JB Minreviews Dear Colleague, The microbial world is a competitive place, and bacteria have evolved diverse strategies to sense their environment and survive in it. These strategies involve acquiring necessary nutrients, particularly when inside a mammalian host, …

Paper of interest comparing taxonomies of SILVA, RDP, Greengenes, NCBI and OTT 

Just a quick post here.  There is a paper of interest I thought I would call attention to: Source: SILVA, RDP, Greengenes, NCBI and OTT — how do these taxonomies compare? | BMC Genomics  by Monika Balvočiūtė and Daniel H. Huson Abstract: Background A key step in microbiome sequencing analysis is read assignment to taxonomic units. …

ASM Press Release: Bacteria Fight Corrosion on Ancient Iron Artifacts

This is a cross-posting of a Press Release from the American Society for Microbiology. A team of Swiss chemists and microbiologists have shown that a species of anaerobic bacterium can inhibit corrosion on archeological artifacts made of iron. The research is published March 10 in Applied and Environmental Microbiology, a journal of the American Society …

#microBEnet News: @kylejbibby receives @NSF CAREER award to study viruses in water

Just found out via Twitter about a cool new grant that was awarded: Congrats to Kyle Bibby @kylejbibby on this NSF grant!#microbenet @SloanFoundation https://t.co/x1slHgygdT — Paula Olsiewski (@polsiewski) March 1, 2017   Through a five-year, $500,000 CAREEER Award from the National Science Foundation, a civil and environmental engineering research group at the University of Pittsburgh’s …

MoBE 2017 Registration and Poster Abstract Submission

Attendee Registration Attendee registration opens March 1st. Please join us at the Microbiology of the Built Environment (2017) Symposium. Registration is open to MoBE researchers, stakeholders and community members. Invited keynotes, speakers, plenary session chairs, panel discussion moderators and panelists are pre-registered by the MoBE 2017 organizing committee. Registration will be open from March 1st through …

NPR’s @jeremyhobson on @hereandnow interviews @jordan_peccia on “How Do Indoor Microbiomes Affect Human Health”

Worth a listen – On “Here and Now” –  Jeremy Hobson interviews Jordan Peccia about the ongoing NPR study on How Do Indoor Microbiomes Affect Human Health? The National Academies of Science, Engineering and Medicine are conducting a study of microbial communities inside buildings and how they affect human health. Source: How Do Indoor Microbiomes Affect Human Health? …

Genomes of eight bacteria from the built environment

We just published an extended genome report from eight bacteria that were sequenced as part of the “Built Environment Reference Genome” (BERG) project. BERG is a microBEnet run effort to increase the number of reference genomes in the Built Environment (BE) by offering free genome sequencing to a number of labs working in the field. …

Call for Papers MoBE 2017 Microbiome Special Issue

Call for Papers: MoBE 2017 Special Issue of BioMed Central’s Microbiome Journal  (Submission Guidelines) We invite submissions of MoBE papers highlighting recent research and emerging hot topics along the theme of “MoBE Research to Applications” for our peer-reviewed MoBE special issue. Publishing charges are sponsored by the MoBE meeting and BioMed Central’s Microbiome Journal. This special issue will be available by October 1st, …

These are actual living microbiologists #actuallivingscientist #microbiology #microbes

I have been tracking #actuallivingscientist postings on Twitter compiled those by people doing microbiology. Actual living microbiologists. [View the story “These are actual living microbiologists #actuallivingscientist #microbiology #microbes #microBEnet” on Storify]

From genomes to phenotypes: Traitar, the microbial trait analyzer

There is an increasing number of studies with a large number genomes recovered from isolate, metagenome, or single cell sequencing. To bridge the gap between the available genome sequences and available phenotype information, we have developed Traitar, a bioinformatics software to phenotype bacteria based on their genome sequence (see workflow below) . Traitar includes phenotype models for …