IPython notebook for basic microbial ecology analysis using QIIME

I’ve gone public with my default QIIME workflow. I hope this will be helpful to some, and I encourage anyone with QIIME skills to read through it to see if I’m missing anything.

Brief blog post about it is here:


and the notebook is hosted here:


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Jenna Lang

Jenna Lang is a postdoctorate associate in Jonathan Eisen's lab and studies the seagrass microbiome.